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A Glossary for Systems Biology


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Further Literature on Selected Terms and Issues

(in alphabetical order)


adaptation

  • ALON (1998). Response regulator output in bacterial chemotaxis. [2]
  • ALON (1999). Robustness in bacterial chemotaxis. [3]
  • DOYLE (2000). Robust Perfect Adaptation in Bacterial chemotaxis through Integral Feedback Control. [63]
  • KANDEL and SCHWARTZ (1995). Essentials of Neural Science and Behavior. [29]
  • KIRSCH (1993). Chemotactic Methyltransferase Promotes Adaptation to Repellents in Bacillus Subtilis. [30]
  • ROSS (1995). A Model of Excitation and Adaptation in Bacterial Chemotaxis. [22]


bacterial chemotaxis

  • ALON (1998). Response regulator output in bacterial chemotaxis. [2]
  • ALON (1999). Robustness in bacterial chemotaxis. [3]
  • DOYLE (2000). Robust Perfect Adaptation in Bacterial chemotaxis through Integral Feedback Control. [63]
  • KIRSCH (1993). Chemotactic Methyltransferase Promotes Adaptation to Repellents in Bacillus Subtilis. [30]
  • KITANO (1999). Foundations of Systems Biology, chapter Systems Biology: Toward System-level Understanding of Biological Systems. [31]
  • ROSS (1995). A Model of Excitation and Adaptation in Bacterial Chemotaxis. [22]


complexity

  • DOYLE and CARLSON (1999). Complexity and robustness. [16]
  • DOYLE and CSETE (2002). Reverse Engineering of Biological Complexity. [12,14]
  • DOYLE (2000). Robustness and Dynamics in Biological Networks. [15]
  • LAUFFENBURGER (2000). Cell Signaling Pathways as Control Modules: Complexity for Simplicity? [39]
  • PLEITGEN, JÜRGENS and SAUPE (1992). Fractals for the Classroom. [51]


control

  • KANDEL and SCHWARTZ (1995). Essentials of Neural Science and Behavior. [29]
  • KITANO (1999). Foundations of Systems Biology, chapter Systems Biology: Toward System-level Understanding of Biological Systems. [31]


feedback

  • DOYLE (2000). Robust Perfect Adaptation in Bacterial chemotaxis through Integral Feedback Control. [63]
  • DOYLE and CSETE (2002). Reverse Engineering of Biological Complexity. [12,14]


Integral control

  • DOYLE (2000). Robust Perfect Adaptation in Bacterial chemotaxis through Integral Feedback Control. [63]


heat shock

  • KITANO (1999). Foundations of Systems Biology, chapter Systems Biology: Toward System-level Understanding of Biological Systems. [31]


hierarchy

  • HOOD, IDEKER and GALITZKI (2001). A New Approach to Decoding Life: Systems Biology. [25]
  • Tree of Life Web. A collaborative Internet project containing information about phylogeny and biodiversity. http://tolweb.org/tree/


model

  • HOOD, IDEKER and GALITZKI (2001). A New Approach to Decoding Life: Systems Biology. [25]


modeling approaches


Biological Cybernetics

  • WIENER (1948). Cybernetics - Control and Communication in the Animal and the Machine. []


BST

  • SAVAGEAU et. al. (1987). Biochemical Systems Theory and Metabolic Control Theory: 1. Fundamental Similarities and Differences. [55]
  • VOIT (2000). Computational Analysis of Biochemical Systems - A Practical Guide for Biochemists and Molecular Biologists. [59]


MCT

  • SAVAGEAU et. al. (1987). Biochemical Systems Theory and Metabolic Control Theory: 1. Fundamental Similarities and Differences. [55]
  • HEINRICH (1996). The Regulation of Cellular Systems. [23]


modularity

  • DOYLE and CSETE (2002). Reverse Engineering of Biological Complexity. [12,14]
  • HOOD, IDEKER and GALITZKI (2001). A New Approach to Decoding Life: Systems Biology. [25]
  • KITANO (1999). Foundations of Systems Biology, chapter Systems Biology: Toward System-level Understanding of Biological Systems. [31]


robustness

  • DOYLE and CARLSON (1999). Complexity and robustness. [16]
  • DOYLE (2000). Robust Perfect Adaptation in Bacterial chemotaxis through Integral Feedback Control. [63]
  • DOYLE (2000). Robust and Dynamics in Biological Networks. [15]
  • HOOD, IDEKER and GALITZKI (2001). A New Approach to Decoding Life: Systems Biology. [25]


systems biology

  • HOOD, IDEKER and GALITZKI (2001). A New Approach to Decoding Life: Systems Biology. [25]
  • KITANO (1999). Foundations of Systems Biology, chapter Systems Biology: Toward System-level Understanding of Biological Systems. [31]
  • KITANO (2002). Systems Biology: A Brief Overview. [34]


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